Molecular Biology and Evolution

24 July 2008

Abstract Research Article

Erik Axelsson, Eske Willerslev, M. Thomas P. Gilbert, and Rasmus Nielsen
The effect of ancient DNA damage on inferences of demographic histories.
MBE Advance Access published on July 24, 2008.
doi:10.1093/molbev/msn163
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Abstract Research Article

Steve Dorus, Zoë N. Freeman, Elizabeth R. Parker, Benjamin D. Heath, and Timothy L. Karr
Recent origins of sperm genes in Drosophila
MBE Advance Access published on July 24, 2008.
doi:10.1093/molbev/msn162
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Abstract Research Article

Eugenio G. Minguet, Francisco Vera, Alberto Marina, Juan Carbonell, and Miguel A. Blázquez
Evolutionary diversification in polyamine biosynthesis
MBE Advance Access published on July 24, 2008.
doi:10.1093/molbev/msn161
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Abstract Research Article

Timothy F. Wright, Erin E. Schirtzinger, Tania Matsumoto, Jessica R. Eberhard, Gary R. Graves, Juan J. Sanchez, Sara Capelli, Heinrich Müller, Julia Scharpegge, Geoffrey K. Chambers, and Robert C. Fleischer
A Multi-locus Molecular Phylogeny of the Parrots (Psittaciformes): Support for a Gondwanan Origin During the Cretaceous
MBE Advance Access published on July 24, 2008.
doi:10.1093/molbev/msn160
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Abstract Research Article

Deodoro C. S. G. Oliveira, Rhitoban Raychoudhury, Dennis V. Lavrov, and John H. Werren
Rapidly Evolving Mitochondrial Genome and Directional Selection in Mitochondrial Genes in the Parasitic Wasp Nasonia (Hymenoptera: Pteromalidae)
MBE Advance Access published on July 24, 2008.
doi:10.1093/molbev/msn159
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23 July 2008

Abstract Research article

Kevin van den Hof, Ronald G. van den Berg, and Barbara Gravendeel
Chalcone Synthase Gene Lineage Diversification confirms Allopolyploid Evolutionary Relationships of European Rostrate Violets
MBE Advance Access published on July 23, 2008.
doi:10.1093/molbev/msn157
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18 July 2008

Abstract Letter

Xiaoqin Sun, Yuanli Zhang, Sihai Yang, Jian-Qun Chen, Barbara Hohn, and Dacheng Tian
Insertion DNA promotes ectopic recombination during meiosis in Arabidopsis
MBE Advance Access published on July 18, 2008.
doi:10.1093/molbev/msn158
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17 July 2008

Abstract Research Article Allyson V. Ritchie, Saskia van Es, Celine Fouquet, and Pauline Schaap From Drought Sensing to Developmental Control: Evolution of Cyclic AMP Signaling in Social Amoebas MBE Advance Access published on July 17, 2008. doi:10.1093/molbev/msn156 [Abstract] [Accepted Manuscript] [Supplementary Data]     OPEN ACCESS ARTICLE

Abstract Research Article

Francisca C. Almeida and Rob DeSalle
Evidence of Adaptive Evolution of Accessory Gland Proteins in Closely Related Species of the Drosophila repleta Group
MBE Advance Access published on July 17, 2008.
doi:10.1093/molbev/msn155
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Abstract Research Article

Jung Shan Hwang, Yasuharu Takaku, Jarrod Chapman, Kazuho Ikeo, Charles N. David, and Takashi Gojobori
Cilium evolution: Identification of a novel protein, nematocilin, in the mechanosensory cilium of Hydra nematocytes
MBE Advance Access published on July 17, 2008.
doi:10.1093/molbev/msn154
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Abstract Research Article

Christina Toft and Mario A. Fares
The evolution of the flagellar assembly pathway in endosymbiotic bacterial genomes
MBE Advance Access published on July 17, 2008.
doi:10.1093/molbev/msn153
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10 July 2008

Abstract Research Article

Tobias H. Kloepper, C. Nickias Kienle, and Dirk Fasshauer
SNAREing the basis of multicellularity: Consequences of protein family expansion during evolution
MBE Advance Access published on July 10, 2008.
doi:10.1093/molbev/msn151
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8 July 2008

Abstract Research Article Sabrina Cadel-Six, Catherine Dauga, Anne Marie Castets, Rosmarie Rippka, Christiane Bouchier, Nicole Tandeau de Marsac, and Martin Welker Halogenase genes in two nonribosomal peptide synthetase gene clusters of Microcystis (Cyanobacteria): sporadic distribution and evolution MBE Advance Access published on July 8, 2008. doi:10.1093/molbev/msn150 [Abstract] [Accepted Manuscript] [Supplementary Data]     OPEN ACCESS ARTICLE

Abstract Research Article Stephan Greiner, Xi Wang, Reinhold G. Herrmann, Uwe Rauwolf, Klaus Mayer, Georg Haberer, and Jörg Meurer The complete nucleotide sequences of the five genetically distinct plastid genomes of Oenothera, subsection Oenothera: II. A microevolutionary view using bioinformatics and formal genetic data MBE Advance Access published on July 8, 2008. doi:10.1093/molbev/msn149 [Abstract] [Accepted Manuscript] [Supplementary Data]     OPEN ACCESS ARTICLE

Abstract Research Article

Christopher M. Jones, Blaz Stres, Magnus Rosenquist, and Sara Hallin
Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification
MBE Advance Access published on July 8, 2008.
doi:10.1093/molbev/msn146
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4 July 2008

Abstract Research Article

Ralph Burgess and Ziheng Yang
Estimation of hominoid ancestral population sizes under Bayesian coalescent models incorporating mutation rate variation and sequencing errors
MBE Advance Access published on July 4, 2008.
doi:10.1093/molbev/msn148
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3 July 2008

Abstract Research Article

Gillian H. Gile and Patrick J. Keeling
Nucleus-encoded periplastid-targeted EFL in chlorarachniophytes
MBE Advance Access published on July 3, 2008.
doi:10.1093/molbev/msn147
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26 June 2008

Abstract Research Article

Le Bao, Hong Gu, Katherine A. Dunn, and Joseph P. Bielawski
Likelihood Based Clustering (LiBaC) for Codon Models, a method for grouping sites according to similarities in the underlying process of evolution
MBE Advance Access published on June 26, 2008.
doi:10.1093/molbev/msn145
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Abstract Research Article

James P. Craig, Sadia Bekal, Matthew Hudson, Leslie Domier, Terry Niblack, and Kris N. Lambert
Analysis Of A Horizontally Transferred Pathway Involved In Vitamin B₆ Biosynthesis From The Soybean Cyst Nematode Heterodera glycines
MBE Advance Access published on June 26, 2008.
doi:10.1093/molbev/msn141
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25 June 2008

Abstract Research Article

Antonis Rokas and Sean B. Carroll
Frequent and Widespread Parallel Evolution of Protein Sequences
MBE Advance Access published on June 25, 2008.
doi:10.1093/molbev/msn143
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Abstract Research Article Sara Vieira-Silva and Eduardo P. C. Rocha An assessment of the impacts of molecular oxygen on the evolution of proteomes MBE Advance Access published on June 25, 2008. doi:10.1093/molbev/msn142 [Abstract] [Accepted Manuscript] [Supplementary Data]     OPEN ACCESS ARTICLE

23 June 2008

Abstract Research Article

Minoru Ueda, Masaru Fujimoto, Shin-ichi Arimura, Nobuhiro Tsutsumi, and Koh-ichi Kadowaki
Presence of a latent mitochondrial targeting signal in gene on mitochondrial genome
MBE Advance Access published on June 23, 2008.
doi:10.1093/molbev/msn139
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Abstract Research Article

Ya-Wen Chang, Fu-Guo Robert Liu, Ning Yu, Huang-Mo Sung, Peggy Yang, Daryi Wang, Chih-Jen Huang, Ming-Che Shih, and Wen-Hsiung Li
Roles of cis- and trans-changes in the regulatory evolution of genes in the gluconeogenic pathway in yeast
MBE Advance Access published on June 23, 2008.
doi:10.1093/molbev/msn138
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Abstract Research Article

Takashi Makino and Aoife McLysaght
Interacting Gene Clusters and the Evolution of the Vertebrate Immune System
MBE Advance Access published on June 23, 2008.
doi:10.1093/molbev/msn137
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19 June 2008

Abstract RESEARCH ARTICLE

Andreas R. Gruber, Carsten Kilgus, Axel Mosig, Ivo L. Hofacker, Wolfgang Hennig, and Peter F. Stadler
Arthropod 7SK RNA
MBE Advance Access published on June 19, 2008.
doi:10.1093/molbev/msn140
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Abstract RESEARCH ARTICLE

Erik Franck, Tim Hulsen, Martijn A. Huynen, Wilfried W. de Jong, Nicolette H. Lubsen, and Ole Madsen
Evolution of closely linked gene pairs in vertebrate genomes
MBE Advance Access published on June 19, 2008.
doi:10.1093/molbev/msn136
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17 June 2008

Abstract Research Article

Yasuhiro Go and Yoshihito Niimura
Similar numbers but different repertoires of olfactory receptor genes in humans and chimpanzees
MBE Advance Access published on June 17, 2008.
doi:10.1093/molbev/msn135
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Abstract Research Article Richard Cordaux, Samuel Pichon, Alison Ling, Philippe Pérez, Carine Delaunay, Fabrice Vavre, Didier Bouchon, and Pierre Grève Intense transpositional activity of insertion sequences in an ancient obligate endosymbiont MBE Advance Access published on June 17, 2008. doi:10.1093/molbev/msn134 [Abstract] [Accepted Manuscript] [Supplementary Data]     OPEN ACCESS ARTICLE

12 June 2008

Abstract Research Article Lisa Klasson, Thomas Walker, Mohammed Sebaihia, Mandy J. Sanders, Michael A. Quail, Angela Lord, Susanne Sanders, Julie Earl, Scott L. O'Neill, Nicholas Thomson, Steven P. Sinkins, and Julian Parkhill Genome Evolution of Wolbachia Strain wPip from the Culex pipiens Group MBE Advance Access originally published on June 12, 2008. This version published June 12, 2008. doi:10.1093/molbev/msn133 [Abstract] [Accepted Manuscript]     OPEN ACCESS ARTICLE

Abstract Research Article

Alon Wellner and Uri Gophna
Neutrality of foreign complex subunits in an experimental model of lateral gene transfer
MBE Advance Access originally published on June 12, 2008. This version published June 12, 2008.
doi:10.1093/molbev/msn131
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11 June 2008

Abstract Research Article

Salvatore D'Aniello, Manuel Irimia, Ignacio Maeso, Juan Pascual-Anaya, Senda Jiménez-Delgado, Stephanie Bertrand, and Jordi Garcia-Fernàndez
Gene Expansion and Retention Leads to A Diverse Tyrosine Kinase Superfamily in Amphioxus
MBE Advance Access originally published on June 11, 2008. This version published July 3, 2008.
doi:10.1093/molbev/msn132
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29 May 2008

Abstract Research Article

Penelope R. Haddrill, Doris Bachtrog, and Peter Andolfatto
Positive and negative selection on noncoding DNA in Drosophila simulans
MBE Advance Access published on May 29, 2008.
doi:10.1093/molbev/msn125
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Abstract Research Article

Sergei L. Kosakovsky Pond, Art F.Y. Poon, Andrew J. Leigh Brown, and Simon D.W. Frost
A Maximum Likelihood Method for Detecting Directional Evolution in Protein Sequences and its Application to Influenza A Virus
MBE Advance Access published on May 29, 2008.
doi:10.1093/molbev/msn123
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2 May 2008

Abstract Research Article Arjun B. Prasad, Marc W. Allard, NISC Comparative Sequencing Program, and Eric D. Green Confirming the Phylogeny of Mammals by Use of Large Comparative Sequence Datasets MBE Advance Access published on May 2, 2008. doi:10.1093/molbev/msn104 [Abstract] [Accepted Manuscript] [Supplementary Data]     OPEN ACCESS ARTICLE

16 August 2007

Abstract Research Article

Jing He, David M. Irwin, and Ya-ping Zhang
Insights into the Evolution of the Motilin/Ghrelin-Associated Family and Their Receptors
MBE Advance Access originally published on August 16, 2007. This version published September 28, 2007.
doi:10.1093/molbev/msm161
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