Molecular Biology and Evolution

Letter:

Yi Xing, Zhengqing Ouyang, Karen Kapur, Matthew P. Scott, and Wing Hung Wong

Assessing the Conservation of Mammalian Gene Expression Using High-Density Exon Arrays
MBE Advance Access published on March 25, 2007
Mol Biol Evol 2007 24: 1283-1285; doi:10.1093/molbev/msm061 [Abstract] [Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Research Articles:

Vivek Gowri-Shankar and Magnus Rattray

A Reversible Jump Method for Bayesian Phylogenetic Inference with a Nonhomogeneous Substitution Model
MBE Advance Access published on March 7, 2007
Mol Biol Evol 2007 24: 1286-1299; doi:10.1093/molbev/msm046 [Abstract] [Full Text] [PDF] [Request Permissions]  

Fulvio Cruciani, Roberta La Fratta, Beniamino Trombetta, Piero Santolamazza, Daniele Sellitto, Eliane Beraud Colomb, Jean-Michel Dugoujon, Federica Crivellaro, Tamara Benincasa, Roberto Pascone, Pedro Moral, Elizabeth Watson, Bela Melegh, Guido Barbujani, Silvia Fuselli, Giuseppe Vona, Boris Zagradisnik, Guenter Assum, Radim Brdicka, Andrey I. Kozlov, Georgi D. Efremov, Alfredo Coppa, Andrea Novelletto, and Rosaria Scozzari

Tracing Past Human Male Movements in Northern/Eastern Africa and Western Eurasia: New Clues from Y-Chromosomal Haplogroups E-M78 and J-M12
MBE Advance Access published on March 10, 2007
Mol Biol Evol 2007 24: 1300-1311; doi:10.1093/molbev/msm049 [Abstract] [Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Simone Linz, Achim Radtke, and Arndt von Haeseler

A Likelihood Framework to Measure Horizontal Gene Transfer
MBE Advance Access published on March 20, 2007
Mol Biol Evol 2007 24: 1312-1319; doi:10.1093/molbev/msm052 [Abstract] [Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Todd J. Barkman, Talline R. Martins, Elizabeth Sutton, and John T. Stout

Positive Selection for Single Amino Acid Change Promotes Substrate Discrimination of a Plant Volatile-Producing Enzyme
MBE Advance Access published on March 20, 2007
Mol Biol Evol 2007 24: 1320-1329; doi:10.1093/molbev/msm053 [Abstract] [Full Text] [PDF] [Request Permissions]  

Sayed A. M. Amer and Yoshinori Kumazawa

The Mitochondrial Genome of the Lizard Calotes versicolor and a Novel Gene Inversion in South Asian Draconine Agamids
MBE Advance Access published on March 22, 2007
Mol Biol Evol 2007 24: 1330-1339; doi:10.1093/molbev/msm054 [Abstract] [Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Pekka Pamilo, Lumi Viljakainen, and Anu Vihavainen

Exceptionally High Density of NUMTs in the Honeybee Genome
MBE Advance Access published on March 22, 2007
Mol Biol Evol 2007 24: 1340-1346; doi:10.1093/molbev/msm055 [Abstract] [Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

JM Flowers, E Sezgin, S Kumagai, DD Duvernell, LM Matzkin, PS Schmidt, and WF Eanes

Adaptive Evolution of Metabolic Pathways in Drosophila
MBE Advance Access published on March 22, 2007
Mol Biol Evol 2007 24: 1347-1354; doi:10.1093/molbev/msm057 [Abstract] [Full Text] [PDF] [Request Permissions]  

Monica M. Cunneen and Peter R. Reeves

The Yersinia kristensenii O11 O-Antigen Gene Cluster was Acquired by Lateral Gene Transfer and Incorporated at a Novel Chromosomal Locus
MBE Advance Access published on March 30, 2007
Mol Biol Evol 2007 24: 1355-1365; doi:10.1093/molbev/msm058 [Abstract] [Full Text] [PDF] [Request Permissions]  

Chung-Shien Wu, Ya-Nan Wang, Shu-Mei Liu, and Shu-Miaw Chaw

Chloroplast Genome (cpDNA) of Cycas taitungensis and 56 cp Protein-Coding Genes of Gnetum parvifolium: Insights into cpDNA Evolution and Phylogeny of Extant Seed Plants
MBE Advance Access published on March 22, 2007
Mol Biol Evol 2007 24: 1366-1379; doi:10.1093/molbev/msm059 [Abstract] [Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Giddy Landan and Dan Graur

Heads or Tails: A Simple Reliability Check for Multiple Sequence Alignments
MBE Advance Access published on March 25, 2007
Mol Biol Evol 2007 24: 1380-1383; doi:10.1093/molbev/msm060 [Abstract] [Full Text] [PDF] [Request Permissions]  

Valentin Ruano-Rubio and Mario A. Fares

Testing the Neutral Fixation of Hetero-Oligomerism in the Archaeal Chaperonin CCT
MBE Advance Access published on April 3, 2007
Mol Biol Evol 2007 24: 1384-1396; doi:10.1093/molbev/msm065 [Abstract] [Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Jonathan P. Bollback and John P. Huelsenbeck

Clonal Interference Is Alleviated by High Mutation Rates in Large Populations
MBE Advance Access published on March 22, 2007
Mol Biol Evol 2007 24: 1397-1406; doi:10.1093/molbev/msm056 [Abstract] [Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

A. Rus Hoelzel, Jody Hey, Marilyn E. Dahlheim, Colin Nicholson, Vladimir Burkanov, and Nancy Black

Evolution of Population Structure in a Highly Social Top Predator, the Killer Whale
MBE Advance Access published on March 30, 2007
Mol Biol Evol 2007 24: 1407-1415; doi:10.1093/molbev/msm063 [Abstract] [Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Simon Y. W. Ho, Tim H. Heupink, Andrew Rambaut, and Beth Shapiro

Bayesian Estimation of Sequence Damage in Ancient DNA
MBE Advance Access published on March 29, 2007
Mol Biol Evol 2007 24: 1416-1422; doi:10.1093/molbev/msm062 [Abstract] [Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

SM Rogers and L Bernatchez

The Genetic Architecture of Ecological Speciation and the Association with Signatures of Selection in Natural Lake Whitefish (Coregonus sp. Salmonidae) Species Pairs
MBE Advance Access published on April 2, 2007
Mol Biol Evol 2007 24: 1423-1438; doi:10.1093/molbev/msm066 [Abstract] [Full Text] [PDF] [Request Permissions]  

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